State of the art immunogenetics and immunoinformatics

Eleni Papakonstantinou, Dimitrios Vlachakis

Keywords


immunogenetics; immunoinformatics

References


Ehrenmann F & Lefranc MP 2011 IMGT/3Dstructure-DB: querying the IMGT database for 3D structures in immunology and immunoinformatics (IG or antibodies, TR, MH, RPI, and FPIA). Cold Spring Harbor Prot 6 prot5637

Filntisi A, Vlachakis D, Matsopoulos G & Kossida S 2013 3D structural bioinformatics of proteins and antibodies: state of the art perspectives and challenges. Int J Syst Biol Biomed Tech 2 67-74

Giudicelli V, Chaume D & Lefranc MP 2005 IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res 33 256-261

Major SM, Nishizuka S, Morita D, Rowland R, Sunshine M, Shankavaram U, Washburn F, Asin D, Kouros-Mehr H, Kane D & Weinstein JN 2006 AbMiner: a bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies. BMC Bioinformatics 7 192

Maltezos A, Platis D, Vlachakis D, Kossida S, Marinou M & Labrou NE 2014 Design, synthesis and application of benzyl-sulfonate biomimetic affinity adsorbents for monoclonal antibody purification from transgenic corn. J Mol Recognit 27 19-31

Swindells MB, Porter CT, Couch M, Hurst J, Abhinandan KR, Nielsen JH, Macindoe G, Hetherington J & Martin AC 2017 abYsis: Integrated Antibody Sequence and Structure-Management, Analysis, and Prediction. J Mol Biol 429 356-364

Vlachakis D, Armaos A, Kasampalidis I, Filntisi A & Kossida S 2014a ASSP; the Antibody Secondary Structure Profile search tool in ICABD 2014

Vlachakis D, Champeris Tsaniras S, Ioannidou K, Papageorgiou L, Baumann M & Kossida S 2014b A series of Notch3 mutations in CADASIL; insights from 3D molecular modelling and evolutionary analyses. J Mol Biochem 3 97-105

Vlachakis D, Champeris Tsaniras S, Tsiliki G, Megalooikonomou V & Kossida S 2014c 3D structural analysis of proteins using electrostatic surfaces based on image segmentation. J Mol Biochem 3 27-33


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